what should i check after alternator shorts out? list of replaced parts.

ok the alternator was shorted a while back when a buddy helped put the car back together. he didnt tighten the stud that gives the positive out of the alt. so it was just tapping the pole on the alt while i was driving. eventually it shorted out the unit and some other stuff.
since then i have replaced a lot of stuff to fix the problem.
problem:
the car seems to bogg down and stutter while driving.
it will stall intermittedly while at a light.
the rpm will just drop after a little shaking from a normal steady 900 rpm.
gas it, and it seems to struggle to accelerate.
replaced items:
alternator,
ecu,
tps,
map sensor,
new honda engine harness,
new battery,
new distributor.
new aicv,
new fuel pump.
i am not sure what else is related directly to the alt and so i am not sure what to check to see what else could be still damaged.
what else could i need to check?
main relay?
any other relays?
maybe a shorted wire? but i dont know where else cause i replaced the engine harness with an oem honda brand new harness.
there is NO cel.
since then i have replaced a lot of stuff to fix the problem.
problem:
the car seems to bogg down and stutter while driving.
it will stall intermittedly while at a light.
the rpm will just drop after a little shaking from a normal steady 900 rpm.
gas it, and it seems to struggle to accelerate.
replaced items:
alternator,
ecu,
tps,
map sensor,
new honda engine harness,
new battery,
new distributor.
new aicv,
new fuel pump.
i am not sure what else is related directly to the alt and so i am not sure what to check to see what else could be still damaged.
what else could i need to check?
main relay?
any other relays?
maybe a shorted wire? but i dont know where else cause i replaced the engine harness with an oem honda brand new harness.
there is NO cel.
Comments
the engine harness is a brand new honda harness.
My battery fuse popped. Left us scratching our heads for a minute...
or
under the drivers side dash?
or
somewhere else ?
i thought the ELD would light up the check engine light or the battery light on the cluster?
no cel or batt light ever comes on.
im not sure where to startling looking.
plus the symptoms sounds like the grounding or something might have damaged my distributor.
ill check the ignitor and coil soon.